species:   Rhsol
pid:       PID0483
parent:    Rhi-milR-118
paralog:   
locus:     KB317811.1:16418-16530
matures:   ['UCAGGAAGCAUGGAUUGGGG', 'CCAGAUUGUUUCCCAGGAC']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317811.1:16418-16530

13 out of bounds
31 alignments
31 proper strand
30 stranded perfect matches

                  ***********************                                                  **********************
GCAGUGUUUGCAAAGAUUGGUUCAGGAAGCAUGGAUUGGGGGGCCAGUGGGAUGUCCACAUGGUCAGCACAUUGUGACAGGGUGUCUGGUUCACCAGAUUGUUUCCCAGGACA
(((.....)))........((((.(((((((....((((.(((((((.....((((.(((..((....))..)))))))......))))))).))))..)))))))..)))).
---------------------UCAGGAAGCAUGGAUUGGGG------------------------------------------------------------------------ l=20 a=2 c
---------------------------------------------------------------------------------------------CCAGAUUGUUUCCCAGGAC- l=19 a=0 c*
--------------------UUCAGGAAGCAUGGAUUGGGG------------------------------------------------------------------------ l=21 a=6 ma
---------------------------------------------------------------------------------------------CCAGAUUGUUUCCCAGGACA l=20 a=0 ma*

----------CAAAGAUUGGUUCAGGAAGCAUG-------------------------------------------------------------------------------- l=23 a=1 
--------------------UUCAGGAAGCAUGGAUUGGG------------------------------------------------------------------------- l=20 a=1 
--------------------UUCAGGAAGCAUGGAUUGGGG------------------------------------------------------------------------ l=21 a=6 (ma)
--------------------UUCAGGAAGCAUGGAUUGGGGG----------------------------------------------------------------------- l=22 a=5 
--------------------UUCAGGAAGCAUGGAUUGGGGGG---------------------------------------------------------------------- l=23 a=4 
--------------------UUCAGGAAGCAUGGAUUGGGGGGC--------------------------------------------------------------------- l=24 a=1 
---------------------UCAGGAAGCAUGGAUUGGG------------------------------------------------------------------------- l=19 a=1 
---------------------UCAGGAAGCAUGGAUUGGGG------------------------------------------------------------------------ l=20 a=2 (c)
---------------------UCAGGAAGCAUGGAUUGGGGG----------------------------------------------------------------------- l=21 a=2 
---------------------UCAGGAAGCAUGGAUUGGGGGG---------------------------------------------------------------------- l=22 a=3 
---------------------UCAGGAAGCAUGGAUUaGGGGG---------------------------------------------------------------------- l=22 a=1 
---------------------UCAGGAAGCAUGGAUUGGGGGGC--------------------------------------------------------------------- l=23 a=2 
----------------------CAGGAAGCAUGGAUUGGGGG----------------------------------------------------------------------- l=20 a=2 

mb-01011
ax-1001011
ku-01
ss-111111101110
fn-111
